Basic Information
Locus ID:
gene.Cymno14g00520
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr14 | 1387992 | 1388708 | - | gene.Cymno14g00520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 26,764.28 Da | 73.44 | 75.00 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 35 | 80 | 6.69679E-24 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 37 | 78 | 2.2E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 91 | 5.52E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 92 | 2.1E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 37 | 78 | 7.5E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 37 | 79 | 12.872856 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 52 | 61 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 157 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_010918493.1 | E3 ubiquitin-protein ligase RMA1H1 [Elaeis guineensis] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NX13 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_53G00720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology