Basic Information
Locus ID:
gene.Cymno13g05170
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the cysteine synthase cystathionine beta- synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 15838115 | 15854535 | + | gene.Cymno13g05170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 39,159.94 Da | 32.34 | 89.14 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01561 | CBS_like | 52 | 342 | 3.05216E-144 | - |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 48 | 334 | 2.6E-65 | IPR001926 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 43 | 347 | 3.14E-98 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 85 | 187 | 9.2E-126 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 49 | 342 | 9.2E-126 | IPR036052 |
| TIGRFAM | TIGR01139 | cysK: cysteine synthase A | 47 | 346 | 3.2E-125 | IPR005859 |
| TIGRFAM | TIGR01136 | cysKM: cysteine synthase | 47 | 346 | 3.0E-124 | IPR005856 |
| ProSitePatterns | PS00901 | Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. | 73 | 91 | - | IPR001216 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00460 (Cyanoamino acid metabolism)
map00460 (Cyanoamino acid metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Reaction:
R00897 (O-Acetyl-L-serine + Hydrogen sulfide <=> L-Cysteine + Acetate)
R02846 (Cysteine + Cyanide ion <=> Hydrogen sulfide + 3-Cyano-L-alanine)
R03524 (L-Cysteine + Hydrogen cyanide <=> Hydrogen sulfide + 3-Cyano-L-alanine)
R03601 (O-Acetyl-L-serine + Hydrogen selenide <=> L-Selenocysteine + Acetate)
R04859 (O-Acetyl-L-serine + Thiosulfate + Thioredoxin + H+ <=> L-Cysteine + Sulfite + Thioredoxin disulfide + Acetate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61440.1 | cysteine synthase C1. Encodes a cysteine synthase isomer CysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway. | 0 |
| RefSeq | XP_008801328.2 | bifunctional L-3-cyanoalanine synthase/cysteine synthase 2, mitochondrial [Phoenix dactylifera] | 0 |
| Q9S757 | Bifunctional L-3-cyanoalanine synthase/cysteine synthase C1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=CYSC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A443NLN0 | Cysteine synthase OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_00798600 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology