Basic Information
Locus ID:
gene.Cymno13g04060
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
belongs to the HisA HisF family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 12827245 | 12874114 | - | gene.Cymno13g04060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 65,421.30 Da | 39.44 | 92.26 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01748 | GATase1_IGP_Synthase | 53 | 251 | 8.96677E-110 | IPR010139 |
| CDD | cd04731 | HisF | 272 | 573 | 6.15163E-104 | IPR004651 |
| Pfam | PF00977 | Histidine biosynthesis protein | 273 | 564 | 2.8E-44 | IPR006062 |
| Pfam | PF00117 | Glutamine amidotransferase class-I | 55 | 250 | 7.1E-21 | IPR017926 |
| SUPERFAMILY | SSF51366 | Ribulose-phoshate binding barrel | 269 | 581 | 3.92E-63 | IPR011060 |
| SUPERFAMILY | SSF52317 | Class I glutamine amidotransferase-like | 52 | 252 | 4.59E-55 | IPR029062 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 274 | 583 | 1.0E-150 | IPR013785 |
| Gene3D | G3DSA:3.40.50.880 | - | 48 | 273 | 2.6E-78 | IPR029062 |
| TIGRFAM | TIGR01855 | IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | 53 | 252 | 5.9E-65 | IPR010139 |
| TIGRFAM | TIGR00735 | hisF: imidazoleglycerol phosphate synthase, cyclase subunit | 270 | 581 | 8.5E-91 | IPR004651 |
| PIRSF | PIRSF036936 | IGPS_HisHF | 50 | 585 | 2.3E-268 | IPR014640 |
| ProSiteProfiles | PS51273 | Glutamine amidotransferase type 1 domain profile. | 52 | 260 | 33.712368 | - |
| ProSiteProfiles | PS51274 | CobBQ-type GATase domain profile. | 50 | 243 | 10.325697 | - |
| Hamap | MF_00278 | Imidazole glycerol phosphate synthase subunit HisH [hisH]. | 52 | 253 | 35.626205 | IPR010139 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26900.1 | HIS HF. encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway | 0 |
| RefSeq | XP_022879985.1 | imidazole glycerol phosphate synthase hisHF, chloroplastic-like isoform X1 [Olea europaea var. sylvestris] | 0 |
| Q9SZ30 | Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HISN4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1XN55 | Imidazole glycerol phosphate synthase hisHF, chloroplastic (Fragment) OS=Anthurium amnicola OX=1678845 GN=At4g26900_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24552, jg38392 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24370 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026286 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012490 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39471, Sbi_jg54872 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14864 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015853 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78437, Sgl80950 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015251, gene:ENSEOMG00000035601 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0012110 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30156390 |
| Apiaceae | Apium graveolens | 1 | Ag9G00986 |
| Arecaceae | Cocos nucifera | 1 | scaffold000755G000040 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715056 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.3634.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G07487 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G26900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10024744m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g24850.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g010480.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1326 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1481 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g04060 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0119s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g22800 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1901 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008791 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03192, Lb1G03205 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.4300, BH01.4605, CH01.4916 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_3BG0286470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0390930.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_068160, gene-QYE76_069177, gene-QYE76_069243 |
| Poaceae | Oryza coarctata | 1 | Oco06G008880 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g15120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G412800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0102110 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr04G006960, Chr07G004690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G383100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG011480, gene_TRIDC4BG038870 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G084400.1, TraesCS4B02G219800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb011150_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-2196 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1605 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1249, evm.TU.LG05.1785 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g07150 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.159 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-19565 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3960 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-22266 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000028l.96 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010450 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8060 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9721 |
| Salicaceae | Populus euphratica | 2 | populus_peu01857, populus_peu35958 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132617353 |
| Solanaceae | Solanum chilense | 1 | SOLCI002512000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026296 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_2213 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1627 |
| Zosteraceae | Zostera marina | 1 | Zosma06g19430.v3.1 |