Basic Information
Locus ID:
gene.Cymno13g03480
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 3223671 | 3259592 | - | gene.Cymno13g03480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 137,444.83 Da | 44.47 | 73.76 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 962 | 1217 | 2.12574E-111 | - |
| CDD | cd06410 | PB1_UP2 | 149 | 244 | 3.00566E-43 | - |
| Pfam | PF00564 | PB1 domain | 161 | 245 | 7.6E-18 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 959 | 1217 | 2.7E-64 | IPR001245 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 161 | 253 | 5.89E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 944 | 1217 | 8.88E-80 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 943 | 1042 | 5.9E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1043 | 1233 | 2.6E-55 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 166 | 246 | 1.5E-11 | - |
| SMART | SM00220 | serkin_6 | 956 | 1219 | 5.4E-62 | IPR000719 |
| SMART | SM00666 | PB1_new | 159 | 246 | 2.2E-29 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 956 | 1219 | 41.587189 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 962 | 987 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1081 | 1093 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1038 | 1051 | 1.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1188 | 1210 | 1.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1125 | 1135 | 1.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1144 | 1166 | 1.4E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1075 | 1093 | 1.4E-14 | IPR001245 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35050.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_010924147.1 | uncharacterized protein LOC105047056 isoform X1 [Elaeis guineensis] | 0 |
| O64768 | RAF-like serine/threonine-protein kinase 24 OS=Arabidopsis thaliana OX=3702 GN=RAF24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9RCN3 | uncharacterized protein LOC105047056 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105047056 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology