Basic Information
Locus ID:
gene.Cymno13g02660
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 1892604 | 1897972 | - | gene.Cymno13g02660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 58,973.11 Da | 61.22 | 89.87 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 242 | 290 | 1.09944E-16 | - |
| Pfam | PF12906 | RING-variant domain | 242 | 289 | 9.2E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 292 | 3.53E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 297 | 4.7E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 241 | 290 | 1.5E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 234 | 296 | 19.066269 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 62 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_042518983.1 | uncharacterized protein LOC122092765 isoform X1 [Macadamia integrifolia] | 0 |
| TrEMBL | A0A1D1Y906 | E3 ubiquitin-protein ligase MARCH7 OS=Anthurium amnicola OX=1678845 GN=March7_4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology