Basic Information
Locus ID:
gene.Cymno13g02570
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 1779977 | 1786617 | - | gene.Cymno13g02570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 46,276.47 Da | 52.22 | 66.69 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 359 | 385 | 3.8E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 324 | 352 | 1.2E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 286 | 313 | 6.9E-8 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 280 | 313 | 1.1E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 320 | 353 | 2.59E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 317 | 353 | 5.1E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 354 | 386 | 6.8E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 276 | 315 | 6.9E-11 | - |
| SMART | SM00547 | zf_4 | 287 | 311 | 7.8E-7 | IPR001876 |
| SMART | SM00547 | zf_4 | 326 | 350 | 2.5E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 359 | 383 | 6.1E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 285 | 314 | 9.946939 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 357 | 386 | 9.563004 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 324 | 353 | 10.46638 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 361 | 380 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 328 | 347 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 107 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_010916149.1 | zinc finger protein VAR3, chloroplastic [Elaeis guineensis] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PC35 | Zinc finger (Ran-binding) family protein OS=Zostera marina OX=29655 GN=ZOSMA_30G00870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology