Basic Information
Locus ID:
gene.Cymno13g02290
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 1563732 | 1567138 | - | gene.Cymno13g02290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 48,161.61 Da | 46.16 | 91.42 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 54 | 252 | 2.30918E-135 | - |
| CDD | cd18787 | SF2_C_DEAD | 263 | 393 | 3.64455E-60 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 276 | 384 | 7.1E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 75 | 236 | 9.4E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 119 | 404 | 3.3E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 40 | 258 | 1.9E-66 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 259 | 423 | 1.2E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 69 | 266 | 7.0E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 303 | 384 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 50 | 78 | 10.273145 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 81 | 251 | 29.23296 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 262 | 423 | 25.855438 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 197 | 205 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_042508346.1 | eukaryotic initiation factor 4A-15 [Macadamia integrifolia] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834YTU1 | Eukaryotic initiation factor 4A-11 OS=Tetracentron sinense OX=13715 GN=HHK36_021839 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology