Basic Information
Locus ID:
gene.Cymno13g01790
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 1204033 | 1213029 | + | gene.Cymno13g01790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 125,387.87 Da | 37.68 | 80.64 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 948 | 0.044 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 489 | 5.1E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 836 | 1095 | 5.23E-32 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 664 | 3.43E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 305 | 543 | 4.1E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 544 | 691 | 2.0E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 768 | 1104 | 1.2E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 536 | 579 | 30.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 910 | 949 | 2.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 622 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1042 | 3.3 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.7E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 492 | 533 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 867 | 907 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 827 | 864 | 84.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 448 | 489 | 1.4E-6 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 381 | 2.5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 917 | 948 | 9.441055 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 455 | 498 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 917 | 948 | 11.277069 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.830774 | IPR006595 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1132 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_038988989.1 | protein TPR3 [Phoenix dactylifera] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XVX1 | Protein TOPLESS OS=Anthurium amnicola OX=1678845 GN=TPL_3 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology