Basic Information
Locus ID:
gene.Cymno13g01620
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the glycosyl hydrolase 17 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 1076763 | 1079411 | + | gene.Cymno13g01620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 62,150.36 Da | 38.98 | 84.83 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00332 | Glycosyl hydrolases family 17 | 86 | 408 | 7.1E-68 | IPR000490 |
| Pfam | PF07983 | X8 domain | 426 | 499 | 3.5E-20 | IPR012946 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 86 | 408 | 2.36E-77 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 85 | 415 | 2.1E-102 | - |
| Gene3D | G3DSA:1.20.58.1040 | - | 419 | 535 | 5.0E-12 | - |
| SMART | SM00768 | X8_cls | 425 | 512 | 3.8E-48 | IPR012946 |
| ProSitePatterns | PS00587 | Glycosyl hydrolases family 17 signature. | 321 | 334 | - | IPR000490 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11820.2 | O-Glycosyl hydrolases family 17 protein. | 0 |
| RefSeq | XP_027086832.1 | glucan endo-1,3-beta-glucosidase 1-like [Coffea arabica] | 0 |
| O65399 | Glucan endo-1,3-beta-glucosidase 1 OS=Arabidopsis thaliana OX=3702 GN=At1g11820 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0K9Q3M0 | Beta-1,3-endoglucanase, family GH17 OS=Zostera marina OX=29655 GN=ZOSMA_10G00420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology