Basic Information
Locus ID:
gene.Cymno13g00030
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr13 | 81899 | 93015 | - | gene.Cymno13g00030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 134,780.83 Da | 47.66 | 79.06 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 489 | 809 | 2.84687E-91 | - |
| CDD | cd18793 | SF2_C_SNF | 1004 | 1169 | 1.34727E-52 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1060 | 1159 | 3.5E-15 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 507 | 887 | 3.6E-68 | IPR000330 |
| SUPERFAMILY | SSF57850 | RING/U-box | 924 | 982 | 3.3E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 457 | 809 | 7.51E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 817 | 1216 | 9.48E-56 | IPR027417 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 922 | 980 | 8.8E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 666 | 820 | 3.5E-33 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 463 | 556 | 6.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 589 | 665 | 1.1E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 824 | 1216 | 5.9E-63 | IPR027417 |
| SMART | SM00490 | helicmild6 | 1076 | 1159 | 1.0E-17 | IPR001650 |
| SMART | SM00487 | ultradead3 | 485 | 786 | 9.6E-29 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 504 | 771 | 13.237816 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1038 | 1212 | 14.208624 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 925 | 961 | 10.409105 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 940 | 949 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 665 | 689 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_008800142.2 | helicase-like transcription factor CHR28 [Phoenix dactylifera] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IVC7 | Helicase-like transcription factor CHR28 OS=Cocos nucifera OX=13894 GN=COCNU_14G006360 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology