Basic Information
Locus ID:
gene.Cymno12g04520
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr12 | 18017692 | 18024265 | + | gene.Cymno12g04520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 46,220.80 Da | 35.59 | 96.49 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18045 | DEADc_EIF4AIII_DDX48 | 39 | 239 | 1.63702E-117 | - |
| CDD | cd18787 | SF2_C_DEAD | 250 | 380 | 3.89703E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 62 | 224 | 2.2E-41 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 263 | 371 | 7.7E-31 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 105 | 393 | 3.75E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 242 | 410 | 1.8E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 22 | 241 | 2.6E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 290 | 371 | 6.9E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 56 | 253 | 1.0E-55 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 249 | 410 | 26.811485 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 37 | 65 | 10.792859 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 68 | 238 | 27.265005 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 184 | 192 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G19760.1 | eukaryotic initiation factor 4A-III. Encodes an RNA helicase that may be a component of the Exon Junction Complex. Subcellular localization is modulated by stress. Under normal conditions it is localized to the nuceloplasm but under hyopoxic conditions it localizes to the nucleolus and splicing speckles. | 0 |
| RefSeq | NP_001105848.1 | putative RH2 protein [Zea mays] | 0 |
| Q5VNM3 | Eukaryotic initiation factor 4A-III homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=EIF4A3A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NS45 | DEAD-box ATP-dependent RNA helicase 2 OS=Zostera marina OX=29655 GN=ZOSMA_66G00150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology