Basic Information
Locus ID:
gene.Cymno12g04440
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr12 | 17976327 | 17978558 | - | gene.Cymno12g04440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.54 | 72,897.35 Da | 35.45 | 98.39 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 620 | 642 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 593 | 616 | 0.056 | IPR001611 |
| Pfam | PF12937 | F-box-like | 36 | 69 | 5.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 71 | 5.89E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 198 | 670 | 1.54E-30 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 290 | 464 | 8.1E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 474 | 677 | 4.4E-29 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 18 | 74 | 1.9E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 169 | 289 | 5.3E-22 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 620 | 645 | 37.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 593 | 618 | 0.0098 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 411 | 436 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 567 | 592 | 95.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 526 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 251 | 276 | 4.7E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 199 | 224 | 0.011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 353 | 378 | 450.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 277 | 302 | 42.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 646 | 671 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 546 | 565 | 82.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 225 | 250 | 0.37 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 385 | 410 | 6.3 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 130 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010251723.1 | PREDICTED: EIN3-binding F-box protein 1-like [Nelumbo nucifera] | 0 |
| TrEMBL | A0A0K9PR10 | F-box family protein OS=Zostera marina OX=29655 GN=ZOSMA_17G00680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology