Basic Information
Locus ID:
gene.Cymno12g04080
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr12 | 17678044 | 17681733 | - | gene.Cymno12g04080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 110,640.69 Da | 36.42 | 100.16 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 250 | 272 | 0.15 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 37 | 76 | 2.4E-12 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 538 | 560 | 1.9 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 701 | 976 | 2.0E-42 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 103 | 164 | 5.3E-7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 689 | 978 | 6.47E-75 | IPR011009 |
| SUPERFAMILY | SSF52047 | RNI-like | 241 | 591 | 3.45E-64 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 37 | 276 | 4.76E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 195 | 6.2E-44 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 660 | 785 | 2.3E-24 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 273 | 341 | 4.2E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 204 | 272 | 2.1E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 342 | 633 | 5.7E-79 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 786 | 1002 | 6.3E-62 | - |
| SMART | SM00369 | LRR_typ_2 | 392 | 416 | 72.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 417 | 440 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 199 | 224 | 85.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 296 | 320 | 170.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 102 | 132 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 512 | 535 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 248 | 272 | 36.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 699 | 978 | 3.2E-29 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 536 | 559 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 560 | 584 | 54.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 151 | 175 | 34.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 699 | 981 | 35.763981 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 104 | 126 | 7.041994 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 705 | 728 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 830 | 842 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_008789980.1 | receptor-like protein kinase HSL1 [Phoenix dactylifera] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7C1Z1 | receptor-like protein kinase HSL1 OS=Phoenix dactylifera OX=42345 GN=LOC103707322 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology