halophFGD

Basic Information

Locus ID: gene.Cymno12g02340

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr12	2579773	2584121	+	gene.Cymno12g02340

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.04	66,994.07 Da	48.12	75.42	-0.35

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13041	PPR repeat family	99	146	2.0E-12	IPR002885
Pfam	PF13041	PPR repeat family	240	287	1.3E-9	IPR002885
Pfam	PF13041	PPR repeat family	310	358	2.0E-11	IPR002885
Pfam	PF13041	PPR repeat family	380	427	2.6E-9	IPR002885
Pfam	PF13041	PPR repeat family	170	217	1.8E-10	IPR002885
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	166	302	1.7E-35	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	8	165	1.9E-27	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	375	449	6.2E-17	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	303	374	1.2E-20	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	104	135	7.1E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	208	238	1.6E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	174	207	5.4E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	278	312	4.3E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	313	347	1.3E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	383	416	2.9E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	244	276	1.9E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	349	382	1.3E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	138	171	7.2E-5	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	241	275	10.994242	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	171	205	11.728648	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	100	134	12.33152	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	135	170	8.79102	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	346	380	10.698286	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	416	450	10.435215	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	381	415	10.687325	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	276	310	9.163705	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	206	240	9.854266	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	65	99	8.6266	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	311	345	12.167101	IPR002885
MobiDBLite	mobidb-lite	consensus disorder prediction	477	500	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17710 (pentatricopeptide repeat domain-containing protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G25630.1	Tetratricopeptide repeat (TPR)-like superfamily protein.
RefSeq	XP_043724051.1	pentatricopeptide repeat-containing protein At5g25630 [Telopea speciosissima]
Swiss-Prot	Q8GZ63	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2
TrEMBL	A0A1D1YT03	Pentatricopeptide repeat-containing protein At5g25630 OS=Anthurium amnicola OX=1678845 GN=At5g25630_4 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg3824, jg7860
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10714, gene_8166
Amaranthaceae	Atriplex hortensis	2	Ah014544, Ah034904
Amaranthaceae	Beta vulgaris	4	BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae	Salicornia europaea	2	Seu_jg16657, Seu_jg19774
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007807
Amaranthaceae	Suaeda glauca	5	Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae	Pistacia vera	2	pistato.v30253400, pistato.v30256590
Apiaceae	Apium graveolens	2	Ag10G01538, Ag7G00293
Arecaceae	Cocos nucifera	1	COCNU_03G012070
Arecaceae	Phoenix dactylifera	1	gene-LOC103710907
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... AsparagusV1_07.417.V1.1
Asteraceae	Flaveria trinervia	1	Ftri3G24253
Brassicaceae	Arabidopsis thaliana	2	AT5G21222.1, AT5G25630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae	Brassica nigra	3	BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2119, Ceq06G1498
Casuarinaceae	Casuarina glauca	3	Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g15860
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae	Plantago ovata	1	Pov_00003850
Plumbaginaceae	Limonium bicolor	2	Lb7G34995, Lb7G35002
Poaceae	Echinochloa crus-galli	3	AH06.2290, BH07.3959, CH06.2313
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_051474, gene-QYE76_051482
Poaceae	Oryza coarctata	2	Oco01G005680, Oco02G005770
Poaceae	Paspalum vaginatum	1	gene-BS78_10G191200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204886, Pt_Chr0205057
Poaceae	Sporobolus alterniflorus	3	Chr07G014820, Chr21G007420, Chr31G007880
Poaceae	Thinopyrum elongatum	1	Tel3E01G276300
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae	Triticum aestivum	3	TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... TraesCS3D02G160600.2
Poaceae	Zea mays	1	Zm00001eb315460_P002
Poaceae	Zoysia macrostachya	1	Zma_g29714
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... evm.TU.LG23.1077
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60417.2, evm.TU.60418.2 ... evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25631
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14993
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4712
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00001456
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae	Populus euphratica	4	populus_peu04868, populus_peu12782, populus_peu21928 ... populus_peu38110
Solanaceae	Lycium barbarum	2	gene-LOC132603462, gene-LOC132635663
Solanaceae	Solanum chilense	2	SOLCI000411300, SOLCI005497300
Solanaceae	Solanum pennellii	2	gene-LOC107026118, gene-LOC107028521
Tamaricaceae	Reaumuria soongarica	2	STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae	Tamarix chinensis	2	TC02G0334, TC12G1292
Zosteraceae	Zostera marina	1	Zosma05g13580.v3.1