Basic Information
Locus ID:
gene.Cymno12g01770
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr12 | 1296897 | 1315558 | + | gene.Cymno12g01770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 120,123.45 Da | 53.38 | 74.87 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 932 | 963 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 845 | 879 | 0.052 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 759 | 1068 | 3.4E-49 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 284 | 567 | 2.18E-14 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 729 | 1071 | 1.9E-123 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 293 | 571 | 3.3E-17 | - |
| SMART | SM00320 | WD40_4 | 882 | 921 | 0.31 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1032 | 1069 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 797 | 836 | 0.042 | IPR001680 |
| SMART | SM00320 | WD40_4 | 925 | 963 | 3.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 974 | 1013 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 839 | 879 | 8.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 748 | 786 | 6.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 932 | 972 | 12.546961 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 846 | 888 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 821 | 845 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 932 | 965 | 10.100143 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 950 | 964 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 823 | 837 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 823 | 837 | 6.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 866 | 880 | 6.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 950 | 964 | 6.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| Coils | Coil | Coil | 589 | 623 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_010924824.1 | protein SPA1-RELATED 4 isoform X1 [Elaeis guineensis] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9RES5 | protein SPA1-RELATED 4 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105047555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology