Basic Information
Locus ID:
gene.Cymno12g01510
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
CONTAINS InterPro DOMAIN s WD40 repeat-like (InterPro IPR011046), WD40 repeat, region (InterPro IPR017986), WD40 repeat (InterPro IPR001680), WD40 YVTN repeat-like (InterPro IPR015943)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr12 | 1036351 | 1062005 | - | gene.Cymno12g01510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 140,074.44 Da | 43.73 | 89.91 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 5 | 388 | 7.33E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 252 | 395 | 9.1E-9 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 903 | 1150 | 1.1E-28 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 2 | 251 | 2.6E-15 | IPR015943 |
| SMART | SM00320 | WD40_4 | 251 | 293 | 0.23 | IPR001680 |
| SMART | SM00320 | WD40_4 | 199 | 242 | 0.0097 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1 | 39 | 21.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 302 | 9.271977 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 280 | 294 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1218 | 1301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1224 | 1301 | - | - |
| Coils | Coil | Coil | 752 | 772 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G24710.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_010913344.1 | uncharacterized protein LOC105039060 [Elaeis guineensis] | 0 |
| Q54K14 | TSET complex member tstF OS=Dictyostelium discoideum OX=44689 GN=tstF PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P351 | Transducin/WD40 repeat-like superfamily protein OS=Zostera marina OX=29655 GN=ZOSMA_40G00430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 5 | jg26467, jg28311, jg28312, jg28313, jg28314 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18969 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022295 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g063920, BVRB_6g145710 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg45049, Sbi_jg58962, Sbi_jg63656 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23231 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012919 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02389, Sgl07538 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000011716, gene:ENSEOMG00000012619 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.3AG0023760, CQ.Regalona.r1.3AG0024240 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30249470 |
| Apiaceae | Apium graveolens | 1 | Ag1G00629 |
| Arecaceae | Cocos nucifera | 4 | COCNU_06G002750, COCNU_14G001560, scaffold036828G000010 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708316, gene-LOC103713325 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2814.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G10595 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G24710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003520m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g22700.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g077500.2N, BniB07g040080.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq05G0001, Ceq05G0007 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0004 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g01510 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0036s00035.v1.0, Dusal.0036s00037.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate03g10920, gene.Thate03g18170 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG03.1701, evm.TU.LG05.1328 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00036345, Pov_00038929 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G15173, Lb2G15174 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2562, BH02.2656, CH02.3873 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0026880, gene-QOZ80_1AG0026890 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0276480.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054285 |
| Poaceae | Oryza coarctata | 3 | Oco01G016060, Oco02G016320, Oco02G017070 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g46510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G214900 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0604983 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G014010, Chr05G019780 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G400700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG035380, gene_TRIDC3BG039750 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G236500.2, TraesCS3B02G263200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb158110_P001, Zm00001eb359400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-25929, nbis-gene-25930 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10776 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG07.368, evm.TU.LG13.1354, evm.TU.LG13.821 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09270 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2362 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10476 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5098 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1393 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000196 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17441, nbisL1-mrna-1785 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22388 |
| Salicaceae | Populus euphratica | 2 | populus_peu11261, populus_peu11262 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132598543 |
| Solanaceae | Solanum chilense | 1 | SOLCI002877500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003769 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_10703 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0622 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13900.v3.1 |