Basic Information
Locus ID:
gene.Cymno12g01480
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr12 | 1011676 | 1014811 | + | gene.Cymno12g01480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 91,103.88 Da | 43.49 | 82.96 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04015 | C2_plant_PLD | 2 | 144 | 5.09341E-60 | - |
| Pfam | PF00614 | Phospholipase D Active site motif | 322 | 360 | 1.5E-10 | IPR001736 |
| Pfam | PF12357 | Phospholipase D C terminal | 722 | 794 | 1.9E-28 | IPR024632 |
| Pfam | PF00168 | C2 domain | 8 | 122 | 2.6E-12 | IPR000008 |
| Pfam | PF00614 | Phospholipase D Active site motif | 651 | 677 | 1.7E-7 | IPR001736 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 150 | 435 | 5.34E-35 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 145 | 6.7E-17 | IPR035892 |
| SUPERFAMILY | SSF56024 | Phospholipase D/nuclease | 484 | 734 | 9.81E-29 | - |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 6 | 152 | 2.4E-12 | IPR035892 |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 471 | 700 | 4.9E-22 | - |
| Gene3D | G3DSA:3.30.870.10 | Endonuclease Chain A | 195 | 433 | 1.3E-24 | - |
| SMART | SM00239 | C2_3c | 9 | 120 | 2.9E-11 | IPR000008 |
| SMART | SM00155 | pld_4 | 650 | 677 | 2.7E-8 | IPR001736 |
| SMART | SM00155 | pld_4 | 322 | 360 | 0.0017 | IPR001736 |
| PIRSF | PIRSF036470 | PLD_plant | 1 | 804 | 0.0 | IPR011402 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 650 | 677 | 15.3868 | IPR001736 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 1 | 121 | 13.894424 | IPR000008 |
| ProSiteProfiles | PS50035 | Phospholipase D phosphodiesterase active site profile. | 322 | 360 | 11.436799 | IPR001736 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko00564 (Glycerophospholipid metabolism)
map00564 (Glycerophospholipid metabolism)
ko00565 (Ether lipid metabolism)
map00565 (Ether lipid metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko04014 (Ras signaling pathway)
map04014 (Ras signaling pathway)
ko04024 (cAMP signaling pathway)
map04024 (cAMP signaling pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04072 (Phospholipase D signaling pathway)
map04072 (Phospholipase D signaling pathway)
map04666 (Fc gamma R-mediated phagocytosis)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15730.1 | phospholipase D alpha 1. Encodes phospholipase D alpha 1 (PLD alpha 1). Positive regulator of abscisic acid (ABA) mediated stomatal movements. PLD alpha 1 plays an important role in seed deterioration and aging in Arabidopsis. | 0 |
| RefSeq | XP_010907269.1 | phospholipase D alpha 1 [Elaeis guineensis] | 0 |
| Q43007 | Phospholipase D alpha 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PLD1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9QCT8 | Phospholipase D OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033970 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology