Basic Information
Locus ID:
gene.Cymno12g00390
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr12 | 271601 | 272677 | - | gene.Cymno12g00390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.82 | 39,345.36 Da | 43.69 | 74.53 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 169 | 203 | 3.7E-5 | IPR006652 |
| Pfam | PF00646 | F-box domain | 5 | 46 | 7.5E-5 | IPR001810 |
| Pfam | PF13964 | Kelch motif | 108 | 157 | 3.7E-6 | - |
| SUPERFAMILY | SSF117281 | Kelch motif | 78 | 340 | 1.57E-36 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 4 | 46 | 4.84E-8 | IPR036047 |
| Gene3D | G3DSA:2.120.10.80 | - | 56 | 352 | 1.4E-33 | IPR015915 |
| SMART | SM00256 | fbox_2 | 8 | 48 | 0.002 | IPR001810 |
| SMART | SM00612 | kelc_smart | 170 | 217 | 3.9E-6 | IPR006652 |
| SMART | SM00612 | kelc_smart | 119 | 167 | 0.0097 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15670.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_010915027.1 | F-box/kelch-repeat protein At1g80440 [Elaeis guineensis] | 0 |
| Q9LMR5 | F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9QY28 | F-box/kelch-repeat protein At1g80440 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105040268 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology