Basic Information
Locus ID:
gene.Cymno11g11360
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 20450976 | 20454804 | + | gene.Cymno11g11360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.34 | 49,067.97 Da | 34.82 | 88.54 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 104 | 427 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 107 | 369 | 1.1E-114 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 105 | 368 | 2.96E-53 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 369 | 426 | 3.79E-18 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 134 | 438 | 2.4E-102 | IPR027417 |
| SMART | SM00382 | AAA_5 | 156 | 327 | 3.7E-10 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 104 | 424 | 7.1E-141 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 135 | 293 | 28.392576 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 298 | 373 | 27.497446 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 312 | 320 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 309 | 337 | 2.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 398 | 415 | 2.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 344 | 373 | 2.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 264 | 293 | 2.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 192 | 221 | 2.0E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 226 | 255 | 2.0E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 105 | 430 | 44.222538 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_008776037.1 | DNA repair protein recA homolog 1, chloroplastic [Phoenix dactylifera] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7BG69 | DNA repair protein recA homolog 1, chloroplastic OS=Phoenix dactylifera OX=42345 GN=LOC103696257 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology