Basic Information
Locus ID:
gene.Cymno11g11340
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 20422760 | 20429077 | + | gene.Cymno11g11340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 64,679.12 Da | 40.24 | 92.26 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 262 | 555 | 1.04656E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 297 | 1.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 385 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 512 | 0.04 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 555 | 3.7E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 343 | 8.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 555 | 9.16E-66 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 252 | 519 | 6.7E-59 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 520 | 570 | 8.4E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 0.0036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 471 | 513 | 0.24 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 22.0 | IPR001680 |
| SMART | SM00668 | ctlh | 93 | 150 | 0.0011 | IPR006595 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 1.4E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 467 | 68.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 5.9E-8 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 93 | 150 | 9.43707 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 300 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 559 | 12.051043 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 13.549507 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 347 | 10.442869 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 60 | 92 | 7.897968 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 499 | 522 | 8.570195 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 559 | 14.585471 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 365 | 387 | 9.706414 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 285 | 299 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 372 | 386 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 543 | 557 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 285 | 299 | 3.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 372 | 386 | 3.2E-6 | IPR020472 |
| Coils | Coil | Coil | 213 | 233 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_008790475.1 | WD repeat-containing protein 26 homolog [Phoenix dactylifera] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1Y0T8 | WD repeat-containing protein 26 OS=Anthurium amnicola OX=1678845 GN=wdr26_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology