halophFGD

Basic Information

Locus ID: gene.Cymno11g11290

Species & Taxonomic ID: Cymodocea nodosa & 55448

Genome Assembly: GCA_036874045.1

Description: U-box domain-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
Chr11	20390416	20393899	-	gene.Cymno11g11290

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.14	88,953.76 Da	43.34	92.38	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	240	282	1.66999E-21	-
Pfam	PF00514	Armadillo/beta-catenin-like repeat	563	601	1.1E-9	IPR000225
Pfam	PF04564	U-box domain	236	307	6.2E-21	IPR003613
Pfam	PF00514	Armadillo/beta-catenin-like repeat	646	683	5.1E-6	IPR000225
SUPERFAMILY	SSF48371	ARM repeat	535	805	8.81E-47	IPR016024
SUPERFAMILY	SSF57850	RING/U-box	231	313	2.93E-27	-
Gene3D	G3DSA:1.25.10.10	-	524	810	7.1E-60	IPR011989
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	235	310	1.1E-26	IPR013083
SMART	SM00185	arm_5	644	684	2.8	IPR000225
SMART	SM00185	arm_5	516	560	280.0	IPR000225
SMART	SM00185	arm_5	685	724	0.0087	IPR000225
SMART	SM00185	arm_5	603	643	4.7	IPR000225
SMART	SM00185	arm_5	725	765	11.0	IPR000225
SMART	SM00185	arm_5	562	602	3.7E-5	IPR000225
SMART	SM00504	Ubox_2	239	302	1.1E-30	IPR003613
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	696	737	10.7274	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	573	610	10.3424	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	655	697	9.8524	IPR000225
ProSiteProfiles	PS51698	U-box domain profile.	235	309	40.798134	IPR003613
MobiDBLite	mobidb-lite	consensus disorder prediction	460	517	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	330	349	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	358	383	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	358	381	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	460	476	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	396	445	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	408	445	-	-

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08332 (vacuolar protein 8)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23140.2	RING/U-box superfamily protein with ARM repeat domain.
RefSeq	XP_039143165.1	U-box domain-containing protein 4 isoform X1 [Dioscorea cayenensis subsp. rotundata]
Swiss-Prot	O22193	U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3
TrEMBL	A0A1D1XMR3	RING-type E3 ubiquitin transferase OS=Anthurium amnicola OX=1678845 GN=PUB4_16 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg4700, jg4701
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23981, gene_25145
Amaranthaceae	Atriplex hortensis	1	Ah031925
Amaranthaceae	Beta vulgaris	3	BVRB_2g043480, BVRB_2g043510, BVRB_6g127640
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13104, Sbi_jg30282, Sbi_jg43700, Sbi_jg51997 ... Sbi_jg52745
Amaranthaceae	Salicornia europaea	3	Seu_jg18207, Seu_jg9099, Seu_jg9860
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010153, GOSA_00023210
Amaranthaceae	Suaeda glauca	5	Sgl33857, Sgl39230, Sgl65815, Sgl65847, Sgl70157
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003241, gene:ENSEOMG00000013691 ... gene:ENSEOMG00000020408, gene:ENSEOMG00000021932, gene:ENSEOMG00000028225, gene:ENSEOMG00000048074
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0001890, CQ.Regalona.r1.2BG0002930 ... CQ.Regalona.r1.6AG0025690, CQ.Regalona.r1.6BG0027230
Anacardiaceae	Pistacia vera	1	pistato.v30205470
Apiaceae	Apium graveolens	2	Ag10G01048, Ag5G00312
Arecaceae	Cocos nucifera	4	COCNU_09G009970, COCNU_10G009950, COCNU_10G009960 ... scaffold006710G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103716639, gene-LOC103720451
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.3469.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G13639, Ftri18G27750, Ftri1G22182, Ftri6G20170
Brassicaceae	Arabidopsis thaliana	2	AT2G23140.1, AT5G67340.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000047m.g.v1.0, Thhalv10003745m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g29320.v2.2, Sp4g02200.v2.2
Brassicaceae	Brassica nigra	4	BniB01g020620.2N, BniB02g020030.2N, BniB06g014510.2N ... BniB07g043720.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1384
Casuarinaceae	Casuarina glauca	1	Cgl05G1385
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno11g11290, gene.Cymno11g11310
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate05g03190, gene.Thate05g03210, gene.Thate05g03280 ... gene.Thate05g03300, gene.Thate06g20280, gene.Thate07g01620
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10061, nbisL1-mrna-10549, nbisL1-mrna-10550 ... nbisL1-mrna-6656
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.945
Plantaginaceae	Plantago ovata	1	Pov_00003835
Plumbaginaceae	Limonium bicolor	2	Lb1G05542, Lb2G08468
Poaceae	Echinochloa crus-galli	6	AH02.4102, AH08.90, BH02.4117, BH08.39, CH02.4148, CH08.159
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_8AG0614970, gene-QOZ80_8BG0642450
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0297900.1, HORVU.MOREX.r3.3HG0327220.1
Poaceae	Lolium multiflorum	1	gene-QYE76_057192
Poaceae	Oryza coarctata	3	Oco02G027740, Oco15G000510, Oco16G000650
Poaceae	Oryza sativa	2	LOC_Os01g66130.1, LOC_Os08g01900.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G359600, gene-BS78_07G013600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0600380, Pt_Chr0700676, Pt_Chr0700704
Poaceae	Sporobolus alterniflorus	4	Chr03G021530, Chr08G020670, Chr16G000010, Chr20G013580
Poaceae	Thinopyrum elongatum	4	Tel3E01G618300, Tel3E01G651500, Tel3E01G878100 ... Tel3E01G878200
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG055610, gene_TRIDC3AG058350 ... gene_TRIDC3AG073760, gene_TRIDC3BG062280, gene_TRIDC3BG085450
Poaceae	Triticum aestivum	7	TraesCS3A02G390200.1, TraesCS3A02G521300.1 ... TraesCS3B02G422200.1, TraesCS3B02G443200.1, TraesCS3B02G591000.1, TraesCS3D02G382500.1, TraesCS3D02G527900.1
Poaceae	Zea mays	3	Zm00001eb145570_P001, Zm00001eb174100_P001 ... Zm00001eb260470_P006
Poaceae	Zoysia japonica	3	nbis-gene-11168, nbis-gene-41408, nbis-gene-51935
Poaceae	Zoysia macrostachya	3	Zma_g22360, Zma_g23507, Zma_g9143
Portulacaceae	Portulaca oleracea	4	evm.TU.LG10.869, evm.TU.LG18.381, evm.TU.LG25.1223 ... evm.TU.LG26.656
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g06870, gene.Posoc08g08720
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.1819
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17331
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2336
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-11949
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000011l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00007880
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15470
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-3267
Salicaceae	Populus euphratica	5	populus_peu14468, populus_peu14478, populus_peu23323 ... populus_peu32433, populus_peu32867
Solanaceae	Lycium barbarum	3	gene-LOC132601989, gene-LOC132604584, gene-LOC132626552
Solanaceae	Solanum chilense	3	SOLCI005329600, SOLCI005442400, SOLCI006710000
Solanaceae	Solanum pennellii	2	gene-LOC107007682, gene-LOC107008077
Tamaricaceae	Reaumuria soongarica	1	STRG.4815_chr03_-
Tamaricaceae	Tamarix chinensis	1	TC04G1828
Zosteraceae	Zostera marina	1	Zosma01g09780.v3.1