Basic Information
Locus ID:
gene.Cymno11g10910
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
UBC4
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 20133650 | 20140439 | + | gene.Cymno11g10910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.28 | 20,842.16 Da | 54.56 | 71.31 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 143 | 4.98812E-49 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 10 | 142 | 4.7E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 4 | 148 | 2.62E-44 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 159 | 1.1E-47 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 148 | 1.2E-47 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 148 | 40.935387 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 73 | 89 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 172 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_009628118.1 | ubiquitin-conjugating enzyme E2-23 kDa isoform X1 [Nicotiana tomentosiformis] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A1S3ZNS1 | ubiquitin-conjugating enzyme E2-23 kDa-like OS=Nicotiana tabacum OX=4097 GN=LOC107788813 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology