Basic Information
Locus ID:
gene.Cymno11g10340
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the AAA ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 19653349 | 19659881 | - | gene.Cymno11g10340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.36 | 75,367.65 Da | 55.06 | 77.70 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 242 | 396 | 2.43571E-6 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 246 | 395 | 4.4E-13 | IPR003959 |
| Pfam | PF14363 | Domain associated at C-terminal with AAA | 21 | 131 | 8.7E-17 | IPR025753 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 176 | 445 | 1.22E-42 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 393 | 4.8E-38 | IPR027417 |
| Gene3D | G3DSA:6.10.280.40 | - | 394 | 465 | 2.5E-5 | - |
| SMART | SM00382 | AAA_5 | 241 | 399 | 2.9E-7 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 367 | 385 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 646 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 317 | 338 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 518 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25835.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_023875398.1 | AAA-ATPase At4g25835-like [Quercus suber] | 0 |
| Q8RY66 | AAA-ATPase At4g25835 OS=Arabidopsis thaliana OX=3702 GN=At4g25835 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P257 | p-loop containing nucleoside triphosphate hydrolases superfamilyprotein OS=Zostera marina OX=29655 GN=ZOSMA_477G00090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg29082, jg29798 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30231190 |
| Apiaceae | Apium graveolens | 1 | Ag1G00394 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G003530 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708667 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_06.474.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0535 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0567 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g10340 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g21200 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.7 |
| Poaceae | Echinochloa crus-galli | 2 | BH03.2307, CH03.2419 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0536760, gene-QOZ80_6BG0490080 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0485200.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_005441 |
| Poaceae | Oryza coarctata | 2 | Oco17G006080, Oco18G006180 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g27340.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G198700 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0702030 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G008860, Chr14G014860, Chr21G013880 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G376700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG036760, gene_TRIDC5BG038780 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G231800.1.cds1, TraesCS5B02G230100.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19730, nbis-gene-30675 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g32633 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g04710 |
| Salicaceae | Populus euphratica | 2 | populus_peu02197, populus_peu35606 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645072 |
| Solanaceae | Solanum chilense | 1 | SOLCI006005900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014207 |
| Zosteraceae | Zostera marina | 1 | Zosma03g25850.v3.1 |