Basic Information
Locus ID:
gene.Cymno11g10040
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 19369091 | 19373056 | - | gene.Cymno11g10040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 34,813.83 Da | 42.32 | 84.98 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 89 | 169 | 3.39794E-53 | - |
| Pfam | PF07650 | KH domain | 94 | 167 | 2.7E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 180 | 262 | 3.9E-25 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 167 | 265 | 1.29E-27 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 84 | 173 | 1.13E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 167 | 293 | 5.9E-65 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 72 | 165 | 1.5E-48 | IPR015946 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 82 | 284 | 9.4E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 95 | 166 | 11.351615 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 221 | 257 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_028751478.1 | 40S ribosomal protein S3-3 [Prosopis alba] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NKZ3 | Putative 40S ribosomal protein S3 OS=Zostera marina OX=29655 GN=ZOSMA_87G00300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology