Basic Information
Locus ID:
gene.Cymno11g08950
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 18552427 | 18555579 | - | gene.Cymno11g08950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.82 | 25,238.61 Da | 59.67 | 59.12 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 129 | 211 | 1.42701E-32 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 131 | 201 | 2.5E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 109 | 224 | 3.76E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 125 | 215 | 1.2E-17 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 130 | 206 | 2.0E-5 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 129 | 215 | 11.826953 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 46 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76940.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_008790540.1 | RNA-binding protein 1 isoform X1 [Phoenix dactylifera] | 0 |
| Q8H0P8 | RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7C2W2 | RNA-binding protein 1 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103707719 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology