Basic Information
Locus ID:
gene.Cymno11g08860
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 18497901 | 18499187 | - | gene.Cymno11g08860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 46,964.10 Da | 44.06 | 100.84 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 23 | 93 | 3.2E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 178 | 406 | 2.1E-12 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 21 | 99 | 3.89E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 12 | 96 | 2.9E-25 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 113 | 409 | 2.8E-15 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 26 | 91 | 1.4E-23 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 22 | 98 | 34.774212 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66160.1 | CYS, MET, PRO, and GLY protein 1. | 0 |
| RefSeq | XP_010279125.1 | PREDICTED: U-box domain-containing protein 21-like [Nelumbo nucifera] | 0 |
| Q9C8D1 | U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A843XT60 | RING-type E3 ubiquitin transferase OS=Colocasia esculenta OX=4460 GN=Taro_055508 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology