Basic Information
Locus ID:
gene.Cymno11g08680
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 18251301 | 18255309 | - | gene.Cymno11g08680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 38,693.28 Da | 55.14 | 89.49 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 302 | 344 | 2.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 292 | 348 | 2.02E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 349 | 4.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 303 | 343 | 1.6E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 302 | 344 | 0.0074 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 303 | 344 | 12.459772 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G68070.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_038977747.1 | E3 ubiquitin protein ligase RIE1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q8GUU2 | E3 ubiquitin protein ligase RIE1 OS=Arabidopsis thaliana OX=3702 GN=RIE1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZWL2 | E3 ubiquitin protein ligase RIE1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC120108239 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology