Basic Information
Locus ID:
gene.Cymno11g08440
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
DNA repair protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 17997893 | 18015968 | + | gene.Cymno11g08440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 40,748.08 Da | 55.78 | 79.58 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 1.97003E-28 | - |
| CDD | cd14382 | UBA2_RAD23_plant | 335 | 377 | 6.11458E-24 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 9.8E-20 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 257 | 312 | 1.6E-21 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 161 | 198 | 1.2E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 339 | 374 | 1.8E-12 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 322 | 381 | 3.4E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 155 | 210 | 8.03E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 4.6E-23 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 253 | 318 | 1.31E-20 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 248 | 313 | 1.4E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 153 | 203 | 1.7E-19 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 330 | 378 | 3.8E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 1.7E-28 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.1E-21 | IPR000626 |
| SMART | SM00165 | uba_6 | 160 | 200 | 0.0017 | IPR015940 |
| SMART | SM00727 | CBM | 255 | 298 | 1.3E-4 | IPR006636 |
| SMART | SM00165 | uba_6 | 339 | 376 | 4.0E-9 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 382 | 2.4E-116 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 336 | 377 | 14.643341 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 158 | 201 | 11.848078 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.174116 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 364 | 2.4E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 365 | 380 | 2.4E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 333 | 349 | 2.4E-35 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 283 | 305 | 2.4E-35 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 97 | 115 | - | - |
| Coils | Coil | Coil | 284 | 304 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_009399729.1 | PREDICTED: ubiquitin receptor RAD23d-like isoform X1 [Musa acuminata subsp. malaccensis] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A8D6ZVS2 | Ubiquitin receptor RAD23 OS=Musa acuminata subsp. malaccensis OX=214687 GN=GSMUA_257960.1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology