Basic Information
Locus ID:
gene.Cymno11g07290
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 14666367 | 14680931 | + | gene.Cymno11g07290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.45 | 115,903.76 Da | 47.73 | 68.33 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 89 | 126 | 2.2E-8 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 511 | 815 | 7.4E-45 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 86 | 128 | 1.74E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 508 | 819 | 7.06E-85 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 503 | 828 | 1.6E-89 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 80 | 129 | 2.6E-12 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 89 | 126 | 11.516247 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 511 | 818 | 49.115669 | IPR028889 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 89 | 126 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 512 | 527 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 825 | 851 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 966 | 985 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1029 | 1057 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24560.1 | ubiquitin-specific protease 16. Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation. | 0 |
| RefSeq | XP_010942663.1 | ubiquitin carboxyl-terminal hydrolase 17 [Elaeis guineensis] | 0 |
| Q9SB51 | Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana OX=3702 GN=UBP16 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PH92 | Ubiquitin carboxyl-terminal hydrolase OS=Zostera marina OX=29655 GN=ZOSMA_23G00950 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology