Basic Information
Locus ID:
gene.Cymno11g05320
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
ubiquitin conjugation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 4016545 | 4026653 | + | gene.Cymno11g05320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 117,005.16 Da | 47.78 | 93.35 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16657 | RING-Ubox_UBE4A | 942 | 1010 | 6.54868E-42 | - |
| Pfam | PF10408 | Ubiquitin elongating factor core | 257 | 919 | 2.3E-200 | IPR019474 |
| Pfam | PF04564 | U-box domain | 940 | 1010 | 8.7E-31 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 929 | 1009 | 1.68E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 939 | 1020 | 2.2E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 943 | 1006 | 1.3E-24 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 939 | 1013 | 33.243904 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1014 | 1035 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1016 | 1035 | - | - |
| Coils | Coil | Coil | 518 | 545 | - | - |
| Coils | Coil | Coil | 489 | 509 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15400.1 | U-box domain-containing protein. | 0 |
| RefSeq | XP_010904932.1 | probable ubiquitin conjugation factor E4 [Elaeis guineensis] | 0 |
| Q9LF41 | Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana OX=3702 GN=PUB1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1XG66 | Putative ubiquitin conjugation factor E4 OS=Anthurium amnicola OX=1678845 GN=PUB1_9 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40222 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24664 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032919 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g039970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29703, Sbi_jg43224 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18673 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004425 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66483, Sgl70817 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014116, gene:ENSEOMG00000022233 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0007040, CQ.Regalona.r1.2BG0008330 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30194160 |
| Apiaceae | Apium graveolens | 1 | Ag4G00928 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G002100, COCNU_13G006020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103710234 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1397.V1.1, AsparagusV1_08.1398.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G30065, Ftri1G03199 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15400.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012542m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28690.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g047460.2N, BniB05g023290.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0361 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0320 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g05320 |
| Dunaliellaceae | Dunaliella salina | 3 | Dusal.0043s00001.v1.0, Dusal.0073s00002.v1.0 ... |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g05880 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2209 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.249 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023628, Pov_00027229 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb2G13063, Lb2G13074 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3259, BH01.3646, CH01.3829 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0228770, gene-QOZ80_3BG0275040 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0737910.1.CDS1 |
| Poaceae | Lolium multiflorum | 6 | gene-QYE76_023489, gene-QYE76_048445, gene-QYE76_048616 ... |
| Poaceae | Oryza coarctata | 2 | Oco05G016410, Oco06G017060 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g31400.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G319200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0105058 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr01G023720, Chr04G013630, Chr07G013050 |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G303700, Tel7E01G809200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG066900, gene_TRIDC7BG060270 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G477300.1.cds1, TraesCS7B02G378900.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb020370_P002, Zm00001eb393280_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-12211 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g986 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1218, evm.TU.LG25.127 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g11480 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.323 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15181 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14780 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-273 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.182 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006878 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11776 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17298 |
| Salicaceae | Populus euphratica | 3 | populus_peu00639, populus_peu09065, populus_peu09324 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623930 |
| Solanaceae | Solanum chilense | 2 | SOLCI000248100, SOLCI001834600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107009670, gene-LOC107021716 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7278 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1150 |
| Zosteraceae | Zostera marina | 1 | Zosma06g09990.v3.1 |