Basic Information
Locus ID:
gene.Cymno11g05300
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 3985240 | 3993339 | - | gene.Cymno11g05300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.93 | 35,188.44 Da | 48.77 | 102.70 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 96 | 125 | 3.5E-6 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 154 | 3.89E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 188 | 3.0E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 151 | 10.04028 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 115 | 124 | - | IPR017907 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_043707858.1 | uncharacterized protein LOC122657139 [Telopea speciosissima] | 0 |
| TrEMBL | A0A843UT99 | RING-type domain-containing protein OS=Colocasia esculenta OX=4460 GN=Taro_018197 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology