Basic Information
Locus ID:
gene.Cymno11g03560
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 2487506 | 2491873 | + | gene.Cymno11g03560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 73,719.59 Da | 30.88 | 74.39 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 331 | 430 | 3.88059E-30 | IPR029413 |
| CDD | cd10317 | RGL4_C | 442 | 631 | 5.8161E-55 | - |
| CDD | cd10320 | RGL4_N | 6 | 288 | 4.10095E-74 | - |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 8 | 198 | 1.2E-92 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 440 | 630 | 3.1E-54 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 354 | 425 | 4.6E-25 | IPR029413 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 17 | 294 | 1.26E-10 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 369 | 426 | 1.29E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 437 | 631 | 1.36E-49 | IPR008979 |
| Gene3D | G3DSA:2.60.40.1120 | - | 329 | 425 | 3.6E-7 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 8 | 309 | 9.3E-12 | IPR014718 |
| Gene3D | G3DSA:2.60.120.260 | - | 438 | 631 | 3.4E-19 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_020242826.1 | probable rhamnogalacturonate lyase B isoform X1 [Asparagus officinalis] | 0 |
| TrEMBL | A0A5P1FNM2 | rhamnogalacturonan endolyase OS=Asparagus officinalis OX=4686 GN=A4U43_C01F10540 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology