Basic Information
Locus ID:
gene.Cymno11g03380
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 2322561 | 2325713 | + | gene.Cymno11g03380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 52,860.46 Da | 39.67 | 66.15 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 225 | 249 | 1.8E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 304 | 330 | 6.8E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 270 | 293 | 9.7E-7 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 265 | 294 | 6.54E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 220 | 252 | 5.02E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 298 | 332 | 1.0E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 260 | 297 | 5.4E-12 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 217 | 253 | 4.2E-11 | - |
| SMART | SM00547 | zf_4 | 304 | 328 | 1.3E-4 | IPR001876 |
| SMART | SM00547 | zf_4 | 227 | 251 | 3.1E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 271 | 295 | 8.3E-7 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 225 | 254 | 9.303284 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 302 | 331 | 9.393621 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 269 | 293 | 9.540421 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 306 | 325 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 273 | 292 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 229 | 248 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 373 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 381 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 400 | 424 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G70650.1 | Ran BP2/NZF zinc finger-like superfamily protein. | 0 |
| RefSeq | XP_020257170.1 | E3 SUMO-protein ligase RanBP2 [Asparagus officinalis] | 0 |
| TrEMBL | A0A3S3NWR9 | Zinc finger protein VAR3, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02534000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology