Basic Information
Locus ID:
gene.Cymno11g03340
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 2291203 | 2298048 | - | gene.Cymno11g03340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 91,162.77 Da | 46.51 | 74.08 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01457 | Leishmanolysin | 166 | 589 | 5.1E-85 | IPR001577 |
| Pfam | PF07974 | EGF-like domain | 631 | 658 | 4.5E-7 | IPR013111 |
| SUPERFAMILY | SSF55486 | "Metalloproteases (""zincins""), catalytic domain" | 109 | 593 | 1.17E-123 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 599 | 628 | 1.1E-5 | - |
| Gene3D | G3DSA:3.90.132.10 | Leishmanolysin , domain 2 | 304 | 430 | 2.8E-35 | - |
| Gene3D | G3DSA:2.30.34.10 | Leishmanolysin domain 4 | 494 | 589 | 1.0E-8 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 630 | 661 | 1.7E-8 | - |
| Gene3D | G3DSA:3.10.170.20 | - | 104 | 295 | 1.1E-34 | - |
| Gene3D | G3DSA:2.10.55.10 | Leishmanolysin domain 3 | 433 | 492 | 8.9E-13 | - |
| SMART | SM00181 | egf_5 | 599 | 627 | 47.0 | IPR000742 |
| SMART | SM00181 | egf_5 | 630 | 659 | 2.8 | IPR000742 |
| ProSiteProfiles | PS50026 | EGF-like domain profile. | 627 | 659 | 12.819471 | IPR000742 |
| ProSitePatterns | PS00022 | EGF-like domain signature 1. | 647 | 658 | - | IPR000742 |
| ProSitePatterns | PS01186 | EGF-like domain signature 2. | 647 | 658 | - | IPR000742 |
| PRINTS | PR00782 | Leishmanolysin (M8) metalloprotease family signature | 393 | 422 | 6.5E-9 | IPR001577 |
| PRINTS | PR00782 | Leishmanolysin (M8) metalloprotease family signature | 240 | 269 | 6.5E-9 | IPR001577 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42620.1 | metalloendopeptidases;zinc ion binding. | 0 |
| RefSeq | XP_010254956.1 | PREDICTED: leishmanolysin homolog [Nelumbo nucifera] | 0 |
| Q8BMN4 | Leishmanolysin-like peptidase OS=Mus musculus OX=10090 GN=Lmln PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8A1I7 | leishmanolysin homolog OS=Nelumbo nucifera OX=4432 GN=LOC104595772 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10621, jg11911, jg22839 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_747 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037111 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g012970 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg39414, Sbi_jg54923 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg14914 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013977 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl13353, Sgl18568 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015049, gene:ENSEOMG00000035276 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0019910, CQ.Regalona.r1.1BG0006620 |
| Apiaceae | Apium graveolens | 3 | Ag2G00296, Ag3G00176, Ag4G02770 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G000330 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707501 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.1520.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri10G04244, Ftri18G12673, Ftri9G12610 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42620.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022547m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp2g07000.v2.2, SpUn0022_0010.v2.2, SpUn0026_0070.v2.2 ... |
| Brassicaceae | Brassica nigra | 1 | BniB02g060330.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1645 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1766 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno09g07290, gene.Cymno11g03340 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0225s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05140 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.536 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00026768 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G15822 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.715, BH01.862, CH01.871 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0217580, gene-QOZ80_3BG0262870 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0339720.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_062151, gene-QYE76_062163 |
| Poaceae | Oryza coarctata | 2 | Oco05G022660, Oco06G023520 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G093200 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0107559, Pt_Chr0107562, Pt_Chr0107607, Pt_Ctg00228 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G006170, Chr04G027890, Chr07G026810, Chr12G031230 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G103300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG039670, gene_TRIDC4BG009590 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G253000.1, TraesCS4B02G062300.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb056220_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14963, nbis-gene-16040 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g2874, Zma_g554 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.902, evm.TU.LG23.114 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06410 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.545, evm.TU.Scaffold_8_RagTag.1064 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-19087, nbisL1-mrna-8995 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10311, nbisL1-mrna-8329 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-15424, nbisL1-mrna-21859 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.539, evm.TU.utg000018l.354 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003786, Maker00011688 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-3030, nbisL1-mrna-5847, nbisL1-mrna-5849 |
| Rhizophoraceae | Rhizophora mangle | 6 | nbisL1-mrna-12473, nbisL1-mrna-12474, nbisL1-mrna-12476 ... |
| Salicaceae | Populus euphratica | 1 | populus_peu31918 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627962 |
| Solanaceae | Solanum chilense | 1 | SOLCI006502500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017811 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1932 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G2296 |
| Zosteraceae | Zostera marina | 1 | Zosma01g01150.v3.1 |