Basic Information
Locus ID:
gene.Cymno11g03310
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr11 | 2270646 | 2280952 | + | gene.Cymno11g03310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 57,779.13 Da | 54.68 | 69.80 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 146 | 198 | 2.67751E-31 | - |
| Pfam | PF12315 | Protein DA1 | 295 | 504 | 9.7E-105 | IPR022087 |
| Pfam | PF00412 | LIM domain | 146 | 200 | 4.2E-10 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 172 | 227 | 5.56E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 138 | 171 | 9.52E-9 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 142 | 219 | 5.9E-16 | - |
| SMART | SM00726 | uim | 42 | 61 | 3.2 | IPR003903 |
| SMART | SM00726 | uim | 106 | 125 | 0.035 | IPR003903 |
| SMART | SM00132 | lim_4 | 145 | 197 | 6.5E-13 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 106 | 125 | 9.801449 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 144 | 204 | 12.2464 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 146 | 180 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 52 | 86 | - | - |
| Coils | Coil | Coil | 88 | 108 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_009406379.1 | PREDICTED: protein DA1-related 1 [Musa acuminata subsp. malaccensis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A804JLY9 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103989301 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology