Basic Information
Locus ID:
gene.Cymno10g10400
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 21636128 | 21637384 | + | gene.Cymno10g10400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 45,560.54 Da | 41.38 | 94.55 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 13 | 56 | 8.41296E-23 | - |
| Pfam | PF04564 | U-box domain | 9 | 79 | 1.3E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 199 | 399 | 1.73E-10 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 79 | 2.0E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 93 | 408 | 3.1E-11 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 91 | 5.9E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 12 | 76 | 1.2E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 8 | 83 | 37.551762 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010934556.1 | E3 ubiquitin-protein ligase PUB23-like [Elaeis guineensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1ZAL8 | RING-type E3 ubiquitin transferase OS=Anthurium amnicola OX=1678845 GN=PUB23_1 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology