Basic Information
Locus ID:
gene.Cymno10g09590
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 21166897 | 21170184 | - | gene.Cymno10g09590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 31,448.89 Da | 43.64 | 88.33 | 0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 22 | 165 | 1.78087E-44 | IPR044744 |
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 280 | 9.06062E-21 | - |
| Pfam | PF13639 | Ring finger domain | 237 | 280 | 2.9E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 73 | 150 | 1.3E-10 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 237 | 283 | 1.96E-18 | - |
| SUPERFAMILY | SSF52025 | PA domain | 89 | 139 | 6.02E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 198 | 285 | 2.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 33 | 163 | 2.9E-25 | - |
| SMART | SM00184 | ring_2 | 238 | 279 | 2.5E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 238 | 280 | 12.813844 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_042406829.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like [Zingiber officinale] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PML0 | RING finger protein 13 OS=Zostera marina OX=29655 GN=ZOSMA_1G02880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology