Basic Information
Locus ID:
gene.Cymno10g09490
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 21110361 | 21119938 | + | gene.Cymno10g09490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 187,105.52 Da | 47.70 | 90.81 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1283 | 1707 | 2.43861E-118 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1331 | 1712 | 1.5E-81 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1275 | 1705 | 1.57E-95 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 12 | 482 | 3.07E-40 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1223 | 1472 | 2.1E-43 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 346 | 494 | 2.8E-5 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1583 | 1710 | 4.0E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 2 | 320 | 3.8E-51 | IPR011989 |
| SMART | SM00185 | arm_5 | 169 | 207 | 12.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 43 | 84 | 7.8 | IPR000225 |
| SMART | SM00185 | arm_5 | 126 | 166 | 61.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1294 | 1712 | 3.5E-85 | IPR000569 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 54 | 82 | 8.5574 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1410 | 1712 | 56.691864 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 980 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 790 | 902 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 895 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 844 | 859 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 916 | 939 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 798 | 843 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_015893373.1 | E3 ubiquitin-protein ligase UPL3 [Ziziphus jujuba var. spinosa] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6P4B4L5 | HECT-type E3 ubiquitin transferase OS=Ziziphus jujuba OX=326968 GN=LOC107427509 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology