Basic Information
Locus ID:
gene.Cymno10g09320
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Protein EARLY FLOWERING
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 21007987 | 21008829 | + | gene.Cymno10g09320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.29 | 16,372.74 Da | 52.66 | 84.62 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 64 | 137 | 7.96713E-27 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 63 | 139 | 2.1E-16 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 63 | 139 | 4.97E-20 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 31 | 140 | 8.4E-22 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 31 | 142 | 7.4E-4 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 1 | 142 | 19.150267 | IPR001229 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G52030.1 | myrosinase-binding protein 2. Similar to myrosinase binding proteins which may be involved in metabolizing glucosinolates and forming defense compounds to protect against herbivory. Also similar to lectins and other agglutinating factors. Expressed only in flowers. | 0 |
| RefSeq | XP_010924946.1 | jacalin-related lectin 19 isoform X2 [Elaeis guineensis] | 0 |
| O65187 | Myrosinase-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=MBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RF17 | jacalin-related lectin 19 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105047632 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology