Basic Information
Locus ID:
gene.Cymno10g08990
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 20764408 | 20765115 | - | gene.Cymno10g08990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 25,374.28 Da | 59.39 | 61.91 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 33 | 77 | 2.32384E-31 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 33 | 80 | 2.5E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 32 | 88 | 7.28E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 89 | 5.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 35 | 75 | 2.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 35 | 76 | 13.492482 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 50 | 59 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010246977.1 | PREDICTED: E3 ubiquitin-protein ligase RNF185 isoform X1 [Nelumbo nucifera] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PSY7 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_16G01060 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology