Basic Information
Locus ID:
gene.Cymno10g07750
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Nuclear autoantigenic sperm protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 19628513 | 19630836 | + | gene.Cymno10g07750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 50,935.58 Da | 53.91 | 82.29 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF10516 | SHNi-TPR | 224 | 255 | 8.3E-7 | IPR019544 |
| SUPERFAMILY | SSF48452 | TPR-like | 195 | 294 | 7.86E-9 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 188 | 314 | 9.2E-10 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 48 | 137 | 4.4E-5 | IPR011990 |
| SMART | SM00028 | tpr_5 | 221 | 254 | 11.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 68 | 101 | 0.93 | IPR019734 |
| SMART | SM00028 | tpr_5 | 263 | 296 | 220.0 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 436 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 463 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 190 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 67 | - | - |
| Coils | Coil | Coil | 290 | 317 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G37210.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_010909345.1 | protein HGV2 isoform X1 [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9QH27 | protein HGV2 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105035476 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg19706 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24200 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026656 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g138320 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg51528, Sbi_jg5839 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg13599 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013478 |
| Amaranthaceae | Suaeda glauca | 19 | Sgl02475, Sgl07628, Sgl12645, Sgl12661, Sgl13877, Sgl15191 ... |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000001794, gene:ENSEOMG00000004090 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.6AG0018430, CQ.Regalona.r1.6BG0019570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30207180 |
| Apiaceae | Apium graveolens | 1 | Ag10G02265 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G017920, COCNU_14G009970 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103709173, gene-LOC103721178 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_08.1487.V1.1, AsparagusV1_08.1705.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G27781, Ftri1G14830 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G37210.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10025057m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g34580.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g014040.2N, BniB05g001920.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1669 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1711 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g07750 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0180s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g03450, gene.Thate05g16950, gene.Thate08g21070 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10533, nbisL1-mrna-7064 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2235 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00024030 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb1G05957, Lb7G35133, Lb7G35138 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.1836, AH03.121, BH01.2150, BH03.134, BH04.1784 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0553930, gene-QOZ80_7BG0584980 |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.2HG0155210.1, HORVU.MOREX.r3.5HG0528360.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_041900, gene-QYE76_044929, gene-QYE76_060536 |
| Poaceae | Oryza coarctata | 2 | Oco13G000760, Oco14G000830 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g03070.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G018500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0301938, Pt_Chr0302198, Pt_Chr0303398, Pt_Chr0604114 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr07G023250, Chr08G008080, Chr19G018530, Chr23G007570 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G473000, Tel2E01G627700, Tel5E01G781500 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC2AG037770, gene_TRIDC2BG040210 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2D02G258500.2, TraesCS4A02G366600.1 ... |
| Poaceae | Zea mays | 10 | Zm00001eb117930_P001, Zm00001eb130830_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35852, nbis-gene-50416 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g4695, Zma_g5912 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.237, evm.TU.LG25.1076 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14070 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_3_RagTag.300, evm.TU.Scaffold_6_RagTag.1946 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-327, nbisL1-mrna-547 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-12367, nbisL1-mrna-16524, nbisL1-mrna-3134 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-11845, nbisL1-mrna-11846, nbisL1-mrna-6030 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000011l.492, evm.TU.utg000019l.1064 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012779 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-15552, nbisL1-mrna-6467 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3153 |
| Salicaceae | Populus euphratica | 3 | populus_peu14274, populus_peu14275, populus_peu23488 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132621697 |
| Solanaceae | Solanum chilense | 1 | SOLCI003384500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011759 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8784_chr03_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0514 |
| Zosteraceae | Zostera marina | 1 | Zosma01g30970.v3.1 |