Basic Information
Locus ID:
gene.Cymno10g07740
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Short Name:
SMG1
Description:
Serine/threonine-protein kinase smg-1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 19590177 | 19622884 | + | gene.Cymno10g07740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 418,067.41 Da | 45.75 | 99.01 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05170 | PIKKc_SMG1 | 1979 | 2284 | 2.9421E-165 | IPR039414 |
| Pfam | PF00454 | Phosphatidylinositol 3- and 4-kinase | 2008 | 2283 | 2.5E-45 | IPR000403 |
| Pfam | PF15785 | Serine/threonine-protein kinase smg-1 | 667 | 1168 | 2.5E-43 | IPR031559 |
| Pfam | PF02260 | FATC domain | 3724 | 3753 | 1.7E-13 | IPR003152 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1973 | 2286 | 1.02E-72 | IPR011009 |
| SUPERFAMILY | SSF48371 | ARM repeat | 37 | 736 | 1.31E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.1010.10 | - | 1945 | 2066 | 2.5E-22 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 34 | 394 | 7.7E-7 | IPR011989 |
| Gene3D | G3DSA:1.10.1070.11 | - | 2142 | 2317 | 1.1E-40 | IPR036940 |
| SMART | SM01343 | FATC_2 | 3722 | 3754 | 3.3E-14 | IPR003152 |
| SMART | SM01345 | Rapamycin_bind_3 | 1800 | 1921 | 1.2E-4 | - |
| SMART | SM00146 | pi3k_hr1_6 | 2009 | 2345 | 1.4E-44 | IPR000403 |
| ProSiteProfiles | PS51189 | FAT domain profile. | 1147 | 1767 | 10.206702 | IPR014009 |
| ProSiteProfiles | PS51190 | FATC domain profile. | 3722 | 3754 | 15.871679 | IPR003152 |
| ProSiteProfiles | PS50290 | Phosphatidylinositol 3- and 4-kinases family profile. | 2008 | 2277 | 38.5401 | IPR000403 |
| ProSitePatterns | PS00916 | Phosphatidylinositol 3- and 4-kinases signature 2. | 2177 | 2197 | - | IPR018936 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 47 | - | - |
| Coils | Coil | Coil | 2845 | 2865 | - | - |
| Coils | Coil | Coil | 2784 | 2811 | - | - |
| Coils | Coil | Coil | 3079 | 3099 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50030.2 | target of rapamycin. Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. | 0 |
| RefSeq | XP_026660615.2 | uncharacterized protein LOC103707474 isoform X2 [Phoenix dactylifera] | 0 |
| C5J7W8 | Serine/threonine-protein kinase SMG1 OS=Danio rerio OX=7955 GN=smg1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1D1YR25 | non-specific serine/threonine protein kinase (Fragment) OS=Anthurium amnicola OX=1678845 GN=SMG1_1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg28717 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26387 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010337 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218300 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12513, Sbi_jg45801 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20163 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022393 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00027, Sgl05097 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000038715 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.9AG0016060 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30113580, pistato.v30278720 |
| Apiaceae | Apium graveolens | 1 | Ag7G01278 |
| Arecaceae | Cocos nucifera | 1 | scaffold002237G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707474 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_06.100.V1.1, AsparagusV1_06.99.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G27127 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G35075.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022517m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g29240.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g063090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0024 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0029 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno10g07740 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0207s00006.v1.0, Dusal.0207s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10850 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.71 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00007563, Pov_00029448, Pov_00029449 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G17189 |
| Poaceae | Echinochloa crus-galli | 3 | BH01.811, CH01.823, Contig309.156 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0340780.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_062025 |
| Poaceae | Oryza coarctata | 1 | Oco06G023900 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g52794.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G087800 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0105996, Pt_Chr0107073, Pt_Chr0107513, Pt_Chr0108215 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr01G005770, Chr12G031570 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G111900 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC4AG038710-17776, gene_TRIDC4AG038710-72141 ... |
| Poaceae | Triticum aestivum | 1 | TraesCS4B02G069200.1 |
| Poaceae | Zea mays | 1 | Zm00001eb056540_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-15011, nbis-gene-15012 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g519 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG08.1867 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g14050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.2146 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-5955 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16929 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3390 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.180 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017325 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4741 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-14076 |
| Salicaceae | Populus euphratica | 2 | populus_peu08945, populus_peu37687 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599114 |
| Solanaceae | Solanum chilense | 1 | SOLCI002767800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002510 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_17751 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1083 |
| Zosteraceae | Zostera marina | 1 | Zosma05g30820.v3.1 |