Basic Information
Locus ID:
gene.Cymno10g07090
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Lipopolysaccharide kinase (Kdo/WaaP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 18881736 | 18888643 | - | gene.Cymno10g07090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.20 | 77,225.05 Da | 41.15 | 79.78 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 236 | 501 | 1.2504E-131 | - |
| Pfam | PF00069 | Protein kinase domain | 237 | 502 | 1.5E-69 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 236 | 527 | 5.66E-82 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 535 | 683 | 2.63E-12 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 230 | 328 | 2.5E-23 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 541 | 610 | 2.8E-14 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 329 | 513 | 2.8E-59 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 520 | 656 | 2.8E-14 | - |
| SMART | SM00220 | serkin_6 | 237 | 502 | 3.0E-100 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 237 | 502 | 51.551659 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 364 | 376 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 243 | 269 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 168 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46700.1 | CDPK-related kinase 3. | 0 |
| RefSeq | XP_029119942.1 | LOW QUALITY PROTEIN: CDPK-related kinase 3-like [Elaeis guineensis] | 0 |
| Q9ZUZ2 | CDPK-related kinase 3 OS=Arabidopsis thaliana OX=3702 GN=CRK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7I8K425 | Protein kinase domain-containing protein OS=Spirodela intermedia OX=51605 GN=SI8410_02003141 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10284, jg29492, jg33908 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23502, gene_3357 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah018521, Ah022796 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g002420 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg14984, Sbi_jg3858, Sbi_jg49091, Sbi_jg55795 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26308, Seu_jg6147 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00000641, GOSA_00017829 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01236, Sgl06320, Sgl10844, Sgl16198 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000001321, gene:ENSEOMG00000014875 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0004600, CQ.Regalona.r1.2BG0026760 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006350, pistato.v30165540 |
| Apiaceae | Apium graveolens | 2 | Ag2G02130, Ag7G01448 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G006350 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103708498, gene-LOC103712190 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.1127.V1.1, AsparagusV1_04.3580.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G13543, Ftri3G05231, Ftri4G32586 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G46700.1, AT3G49370.1, AT5G24430.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10001366m.g.v1.0, Thhalv10003876m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g22900.v2.2, Sp4g28740.v2.2, Sp5g12700.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB01g000760.2N, BniB02g077300.2N, BniB06g010020.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1280, Ceq09G1667 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G1439, Cgl09G1800 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g07090, gene.Cymno14g08640 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g11540, gene.Thate08g18890 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.639, evm.TU.LG05.1243 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010115, Pov_00041201 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G04064, Lb5G27376 |
| Poaceae | Echinochloa crus-galli | 5 | AH01.1610, BH01.1807, BH06.2754, CH01.1899, CH06.3100 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0113590, gene-QOZ80_2BG0166760 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0049840.1, HORVU.MOREX.r3.7HG0721290.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030561, gene-QYE76_035305 |
| Poaceae | Oryza coarctata | 4 | Oco11G017180, Oco12G017410, Oco19G007840, Oco20G007670 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g50030.1, LOC_Os10g36710.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G179000, gene-BS78_10G276400 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0400889, Pt_Chr0401014, Pt_Chr0502884, Pt_Chr0502894 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G033280, Chr05G000540, Chr06G029600, Chr09G002600 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G319100, Tel7E01G651100 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG027240, gene_TRIDC1BG033740 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G178400.1, TraesCS1B02G201900.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb043750_P002, Zm00001eb220460_P002 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-40771 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g31135, Zma_g33405 |
| Portulacaceae | Portulaca oleracea | 8 | evm.TU.LG01.73, evm.TU.LG02.1361, evm.TU.LG04.2105 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g12850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.674, evm.TU.Scaffold_9_RagTag.639 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-21580, nbisL1-mrna-7424 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9635 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7437 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000003l.185, evm.TU.utg000012l.434 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017594 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1681 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5402 |
| Salicaceae | Populus euphratica | 3 | populus_peu27511, populus_peu29397, populus_peu31502 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632146, gene-LOC132645388 |
| Solanaceae | Solanum chilense | 2 | SOLCI004878400, SOLCI005417400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107008902, gene-LOC107015314 |
| Tamaricaceae | Reaumuria soongarica | 3 | STRG.26599_chr11_+, gene_3978, gene_9939 |
| Tamaricaceae | Tamarix chinensis | 3 | TC03G2040, TC06G2694, TC09G2365 |
| Zosteraceae | Zostera marina | 1 | Zosma03g26200.v3.1 |