Basic Information
Locus ID:
gene.Cymno10g06080
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 18012387 | 18016341 | - | gene.Cymno10g06080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.11 | 68,644.71 Da | 33.26 | 83.52 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18312 | BTB_POZ_NPY3-like | 20 | 124 | 1.36083E-45 | - |
| Pfam | PF03000 | NPH3 family | 211 | 465 | 1.0E-89 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 26 | 116 | 2.7E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 116 | 2.12E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 16 | 120 | 1.1E-12 | IPR011333 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 489 | 89.144508 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 29 | 97 | 11.150643 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 544 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 508 | 524 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_010907392.1 | BTB/POZ domain-containing protein NPY4 isoform X1 [Elaeis guineensis] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0PC35 | BTB/POZ domain-containing protein NPY4 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology