Basic Information
Locus ID:
gene.Cymno10g05620
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 17556245 | 17558193 | + | gene.Cymno10g05620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 51,068.08 Da | 44.35 | 76.49 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 115 | 429 | 1.9E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 76 | 464 | 2.84E-127 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 69 | 467 | 3.3E-119 | IPR012334 |
| SMART | SM00710 | pbh1 | 352 | 373 | 200.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 323 | 344 | 0.44 | IPR006626 |
| SMART | SM00710 | pbh1 | 270 | 291 | 6600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 293 | 313 | 3500.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 220 | 250 | 46.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 300 | 313 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_038974020.1 | polygalacturonase At1g48100-like [Phoenix dactylifera] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A843UMT0 | Polygalacturonase At1g80170 OS=Colocasia esculenta OX=4460 GN=Taro_017319 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology