Basic Information
Locus ID:
gene.Cymno10g02710
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 12424659 | 12443553 | + | gene.Cymno10g02710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 96,790.49 Da | 67.36 | 62.56 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 795 | 835 | 5.22781E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 793 | 840 | 7.7E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 787 | 841 | 1.77E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 775 | 846 | 8.9E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 796 | 835 | 10.77793 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 663 | 684 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 479 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 135 | 241 | - | - |
| Coils | Coil | Coil | 102 | 122 | - | - |
| Coils | Coil | Coil | 725 | 745 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_019705265.1 | uncharacterized protein LOC105042919 [Elaeis guineensis] | 0 |
| TrEMBL | A0A0K9PGB9 | RING/U-box superfamily protein OS=Zostera marina OX=29655 GN=ZOSMA_26G00360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology