Basic Information
Locus ID:
gene.Cymno10g02600
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 11707535 | 11709628 | + | gene.Cymno10g02600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 49,450.60 Da | 40.52 | 88.03 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 89 | 347 | 3.37894E-88 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 374 | 415 | 3.39329E-22 | - |
| Pfam | PF04564 | U-box domain | 370 | 440 | 4.0E-22 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 86 | 336 | 1.2E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 60 | 338 | 1.23E-65 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 357 | 440 | 1.06E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 368 | 442 | 4.2E-28 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 51 | 155 | 3.3E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 156 | 356 | 1.0E-45 | - |
| SMART | SM00504 | Ubox_2 | 373 | 436 | 7.3E-26 | IPR003613 |
| SMART | SM00220 | serkin_6 | 83 | 348 | 4.1E-29 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 369 | 442 | 36.605274 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 83 | 442 | 32.400089 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 201 | 213 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 89 | 110 | - | IPR017441 |
| Coils | Coil | Coil | 13 | 54 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_008804030.2 | U-box domain-containing protein 33-like [Phoenix dactylifera] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CQB5 | U-box domain-containing protein 33-like OS=Phoenix dactylifera OX=42345 GN=LOC103717427 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology