Basic Information
Locus ID:
gene.Cymno10g01780
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 1771582 | 1786106 | - | gene.Cymno10g01780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 97,988.03 Da | 53.07 | 67.59 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 520 | 556 | 1.5E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 411 | 442 | 2.4E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 562 | 598 | 2.1E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 404 | 736 | 5.95E-52 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 322 | 476 | 5.5E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 483 | 771 | 9.6E-45 | IPR015943 |
| SMART | SM00320 | WD40_4 | 655 | 691 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 601 | 639 | 8.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 2.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 443 | 1.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 518 | 556 | 8.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 692 | 733 | 0.47 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 411 | 444 | 13.348998 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 525 | 559 | 10.891048 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 565 | 600 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 565 | 600 | 9.915599 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 411 | 444 | 11.075592 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 525 | 565 | 13.983944 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 543 | 557 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 430 | 444 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 585 | 599 | 4.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 543 | 557 | 4.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 430 | 444 | 4.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 231 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 59 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 104 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 363 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 206 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54200.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_008802494.1 | WD repeat-containing protein 44-like [Phoenix dactylifera] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1D1XPG7 | WD repeat-containing protein 44 OS=Anthurium amnicola OX=1678845 GN=WDR44_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology