Basic Information
Locus ID:
gene.Cymno10g01700
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RNA polymerase II C-terminal domain phosphatase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 1700966 | 1713684 | - | gene.Cymno10g01700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.95 | 116,096.64 Da | 51.85 | 79.48 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 361 | 470 | 1.1E-7 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 837 | 876 | 1.4E-4 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 243 | 476 | 5.77E-20 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 923 | 990 | 4.63E-8 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 812 | 877 | 9.1E-8 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 241 | 510 | 3.7E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 803 | 884 | 7.9E-7 | - |
| SMART | SM00577 | forpap2 | 304 | 480 | 7.6E-18 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 921 | 989 | 0.068 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 813 | 877 | 3.2E-7 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 245 | 496 | 15.722292 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 812 | 878 | 11.57696 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 674 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 637 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 673 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010918441.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Elaeis guineensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R0I3 | protein-serine/threonine phosphatase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology