Basic Information
Locus ID:
gene.Cymno10g01020
Species & Taxonomic ID:
Cymodocea nodosa & 55448
Genome Assembly:
GCA_036874045.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr10 | 744706 | 747954 | + | gene.Cymno10g01020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 35,423.62 Da | 44.74 | 63.04 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 243 | 301 | 1.3E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 60 | 141 | 5.3E-18 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 243 | 7.07E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 132 | 189 | 6.67E-18 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 57 | 130 | 6.54E-16 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 267 | 303 | 1.9E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 249 | 3.0E-8 | IPR013083 |
| SMART | SM00184 | ring_2 | 196 | 238 | 6.9E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 131 | 195 | 32.328403 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 53 | 129 | 25.028297 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 196 | 238 | 11.176261 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_031261160.1 | E3 ubiquitin-protein ligase RZFP34 [Pistacia vera] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IYT7 | RING-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_002351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology